IL_3J9Y_132

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_132 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1174

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

3J9Y|1|a|U|409
3J9Y|1|a|G|410
3J9Y|1|a|A|411
3J9Y|1|a|A|412
3J9Y|1|a|G|413
3J9Y|1|a|A|414
3J9Y|1|a|A|415
3J9Y|1|a|G|416
*
3J9Y|1|a|U|427
3J9Y|1|a|G|428
3J9Y|1|a|U|429
3J9Y|1|a|A|430
3J9Y|1|a|A|431
3J9Y|1|a|A|432
3J9Y|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4