IL_3J9Y_134

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

3J9Y|1|a|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_134 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1203

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3J9Y|1|a|G|446
3J9Y|1|a|G|447
3J9Y|1|a|A|448
3J9Y|1|a|G|449
3J9Y|1|a|G|450
*
3J9Y|1|a|C|483
3J9Y|1|a|G|484
3J9Y|1|a|U|485
3J9Y|1|a|U|486
3J9Y|1|a|A|487
3J9Y|1|a|C|488

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16