IL_3J9Y_157

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

3J9Y|1|a|G|1032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J9Y|1|a|G|1003
3J9Y|1|a|A|1004
3J9Y|1|a|A|1005
3J9Y|1|a|G|1006
*
3J9Y|1|a|U|1023
3J9Y|1|a|G|1024
3J9Y|1|a|U|1025
3J9Y|1|a|G|1026
3J9Y|1|a|C|1027
3J9Y|1|a|C|1028
3J9Y|1|a|U|1029
3J9Y|1|a|U|1030
3J9Y|1|a|C|1031
3J9Y|1|a|G|1032
3J9Y|1|a|G|1033
3J9Y|1|a|G|1034
3J9Y|1|a|A|1035
3J9Y|1|a|A|1036
3J9Y|1|a|C|1037

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14