IL_3J9Y_170

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

3J9Y|1|a|C|1400, 3J9Y|1|a|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_170 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.2862

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

3J9Y|1|a|C|1399
3J9Y|1|a|C|1400
3J9Y|1|a|G|1401
*
3J9Y|1|a|C|1501
3J9Y|1|a|A|1502
3J9Y|1|a|A|1503
3J9Y|1|a|G|1504

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain v

Transfer RNA; tRNA

Chain x

mRNA