IL_3J9Y_182

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAA*UCAC

Length

40 nucleotides

Bulged bases

3J9Y|1|A|U|1061, 3J9Y|1|A|U|1065, 3J9Y|1|A|U|1066, 3J9Y|1|A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J9Y|1|A|G|1055
3J9Y|1|A|G|1056
3J9Y|1|A|A|1057
3J9Y|1|A|U|1058
3J9Y|1|A|G|1059
3J9Y|1|A|U|1060
3J9Y|1|A|U|1061
3J9Y|1|A|G|1062
3J9Y|1|A|G|1063
3J9Y|1|A|C|1064
3J9Y|1|A|U|1065
3J9Y|1|A|U|1066
3J9Y|1|A|A|1067
3J9Y|1|A|G|1068
3J9Y|1|A|A|1069
3J9Y|1|A|A|1070
3J9Y|1|A|G|1071
3J9Y|1|A|C|1072
3J9Y|1|A|A|1073
3J9Y|1|A|G|1074
3J9Y|1|A|C|1075
3J9Y|1|A|C|1076
3J9Y|1|A|A|1077
3J9Y|1|A|U|1078
3J9Y|1|A|C|1079
3J9Y|1|A|A|1080
3J9Y|1|A|U|1081
3J9Y|1|A|U|1082
3J9Y|1|A|U|1083
3J9Y|1|A|A|1084
3J9Y|1|A|A|1085
3J9Y|1|A|A|1086
3J9Y|1|A|G|1087
3J9Y|1|A|A|1088
3J9Y|1|A|A|1089
3J9Y|1|A|A|1090
*
3J9Y|1|A|U|1101
3J9Y|1|A|C|1102
3J9Y|1|A|A|1103
3J9Y|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain 5

50S ribosomal protein L10

Chain I

50S ribosomal protein L11

Chain M

50S ribosomal protein L16

Chain w

Tetracycline resistance protein TetM