Loop IL_3J9Y

3D structure

PDB id: 3J9Y (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: UGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGU*GCAUGGAGCCGACCUUGAAAUACCACCCUUUA
Length: 66 nucleotides
Bulged bases: 3J9Y|1|A|U|2111, 3J9Y|1|A|U|2118, 3J9Y|1|A|G|2125, 3J9Y|1|A|U|2132, 3J9Y|1|A|U|2172
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3J9Y|1|A|U|2106
3J9Y|1|A|G|2107
3J9Y|1|A|A|2108
3J9Y|1|A|U|2109
3J9Y|1|A|G|2110
3J9Y|1|A|U|2111
3J9Y|1|A|G|2112
3J9Y|1|A|U|2113
3J9Y|1|A|A|2114
3J9Y|1|A|G|2115
3J9Y|1|A|G|2116
3J9Y|1|A|A|2117
3J9Y|1|A|U|2118
3J9Y|1|A|A|2119
3J9Y|1|A|G|2120
3J9Y|1|A|G|2121
3J9Y|1|A|U|2122
3J9Y|1|A|G|2123
3J9Y|1|A|G|2124
3J9Y|1|A|G|2125
3J9Y|1|A|A|2126
3J9Y|1|A|G|2127
3J9Y|1|A|G|2128
3J9Y|1|A|C|2129
3J9Y|1|A|U|2130
3J9Y|1|A|U|2131
3J9Y|1|A|U|2132
3J9Y|1|A|G|2133
3J9Y|1|A|A|2134
3J9Y|1|A|A|2135
3J9Y|1|A|G|2136
3J9Y|1|A|U|2137
3J9Y|1|A|G|2138
3J9Y|1|A|U|2139
*
3J9Y|1|A|G|2152
3J9Y|1|A|C|2153
3J9Y|1|A|A|2154
3J9Y|1|A|U|2155
3J9Y|1|A|G|2156
3J9Y|1|A|G|2157
3J9Y|1|A|A|2158
3J9Y|1|A|G|2159
3J9Y|1|A|C|2160
3J9Y|1|A|C|2161
3J9Y|1|A|G|2162
3J9Y|1|A|A|2163
3J9Y|1|A|C|2164
3J9Y|1|A|C|2165
3J9Y|1|A|U|2166
3J9Y|1|A|U|2167
3J9Y|1|A|G|2168
3J9Y|1|A|A|2169
3J9Y|1|A|A|2170
3J9Y|1|A|A|2171
3J9Y|1|A|U|2172
3J9Y|1|A|A|2173
3J9Y|1|A|C|2174
3J9Y|1|A|C|2175
3J9Y|1|A|A|2176
3J9Y|1|A|C|2177
3J9Y|1|A|C|2178
3J9Y|1|A|C|2179
3J9Y|1|A|U|2180
3J9Y|1|A|U|2181
3J9Y|1|A|U|2182
3J9Y|1|A|A|2183

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

No other chains within 10Å

IL_3J9Y_189