IL_3J9Y_199

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GU(5MC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_199 not in the Motif Atlas

Homologous match to IL_5J7L_363

Geometric discrepancy: 0.0725

The information below is about IL_5J7L_363

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3J9Y|1|a|G|1405
3J9Y|1|a|U|1406
3J9Y|1|a|5MC|1407
*
3J9Y|1|a|G|1494
3J9Y|1|a|U|1495
3J9Y|1|a|C|1496

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain x

mRNA