IL_3JAG_032

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GCCCGGC*GUC

Length

10 nucleotides

Bulged bases

3JAG|1|5|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_032 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3326

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

3JAG|1|5|G|500
3JAG|1|5|C|501
3JAG|1|5|C|502
3JAG|1|5|C|503
3JAG|1|5|G|504
3JAG|1|5|G|505
3JAG|1|5|C|506
*
3JAG|1|5|G|652
3JAG|1|5|U|653
3JAG|1|5|C|654

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Q

eL18

Chain a

uL15