IL_3JAG_054

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_054 not in the Motif Atlas

Geometric match to IL_4WF9_087

Geometric discrepancy: 0.1349

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

3JAG|1|5|C|1431
3JAG|1|5|G|1432
3JAG|1|5|A|1433
3JAG|1|5|G|1434
*
3JAG|1|5|C|1450
3JAG|1|5|G|1451
3JAG|1|5|A|1452
3JAG|1|5|G|1453

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Q

eL18