IL_3JAG_072

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GUCU*AAC

Length

7 nucleotides

Bulged bases

3JAG|1|5|U|1754, 3JAG|1|5|C|1755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_072 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2944

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

3JAG|1|5|G|1753
3JAG|1|5|U|1754
3JAG|1|5|C|1755
3JAG|1|5|U|1756
*
3JAG|1|5|A|1775
3JAG|1|5|A|1776
3JAG|1|5|C|1777

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain D

uL18