IL_3JAG_085

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

3JAG|1|5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_085 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.1703

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

3JAG|1|5|G|2001
3JAG|1|5|A|2002
3JAG|1|5|G|2003
3JAG|1|5|U|2004
3JAG|1|5|G|2005
*
3JAG|1|5|C|2014
3JAG|1|5|U|2015
3JAG|1|5|C|2016

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain t

uL11