IL_3JAG_086

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

3JAG|1|5|C|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_086 not in the Motif Atlas

Geometric match to IL_3DIL_001

Geometric discrepancy: 0.386

The information below is about IL_3DIL_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

3JAG|1|5|C|2083
3JAG|1|5|C|2084
3JAG|1|5|G|2085
*
3JAG|1|5|C|2272
3JAG|1|5|G|2273

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain F

uL30

Chain Q

eL18

Chain e

eL32