3D structure

PDB id
3JAG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
AAG*CCU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAG_106 not in the Motif Atlas
Homologous match to IL_5TBW_075
Geometric discrepancy: 0.0868
The information below is about IL_5TBW_075
Detailed Annotation
Isolated tWW turn
Broad Annotation
No text annotation
Motif group
IL_54997.8
Basepair signature
cWW-tWW-cWW
Number of instances in this motif group
8

Unit IDs

3JAG|1|5|A|2844
3JAG|1|5|A|2845
3JAG|1|5|G|2846
*
3JAG|1|5|C|3842
3JAG|1|5|C|3843
3JAG|1|5|U|3844

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
uL3
Chain V
uL14
Chain W
eL24

Coloring options:


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