IL_3JAG_127

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

3JAG|1|5|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_127 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1346

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

3JAG|1|5|U|3927
3JAG|1|5|A|3928
3JAG|1|5|G|3929
*
3JAG|1|5|U|4181
3JAG|1|5|G|4182
3JAG|1|5|G|4183
3JAG|1|5|G|4184

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain A

uL2

Chain N

eL15

Chain o

eL42