IL_3JAG_161

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UCCU*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_161 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2873

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

3JAG|1|5|U|4885
3JAG|1|5|C|4886
3JAG|1|5|C|4887
3JAG|1|5|U|4888
*
3JAG|1|5|G|4931
3JAG|1|5|U|4932
3JAG|1|5|C|4933
3JAG|1|5|A|4934

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

eL6

Chain M

eL14

Chain f

eL33