IL_3JAG_231

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAG_231 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.2382

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

3JAG|1|9|U|1101
3JAG|1|9|G|1102
3JAG|1|9|C|1103
*
3JAG|1|9|G|1129
3JAG|1|9|G|1130
3JAG|1|9|G|1131

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain BB

eS1

Chain NN

uS15

Chain RR

eS17

Chain bb

eS27