IL_3JAG_280

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GCCUCGGAUAG*UGCGGAGUGC

Length

21 nucleotides

Bulged bases

3JAG|1|5|C|4756, 3JAG|1|5|C|4757, 3JAG|1|5|U|4763, 3JAG|1|5|C|4871, 3JAG|1|5|G|4872, 3JAG|1|5|A|4874, 3JAG|1|5|G|4877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAG|1|5|G|4755
3JAG|1|5|C|4756
3JAG|1|5|C|4757
3JAG|1|5|U|4758
3JAG|1|5|C|4759
3JAG|1|5|G|4760
3JAG|1|5|G|4761
3JAG|1|5|A|4762
3JAG|1|5|U|4763
3JAG|1|5|A|4764
3JAG|1|5|G|4765
*
3JAG|1|5|U|4869
3JAG|1|5|G|4870
3JAG|1|5|C|4871
3JAG|1|5|G|4872
3JAG|1|5|G|4873
3JAG|1|5|A|4874
3JAG|1|5|G|4875
3JAG|1|5|U|4876
3JAG|1|5|G|4877
3JAG|1|5|C|4878

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

eL6

Chain H

uL6

Chain M

eL14

Chain O

uL13

Chain S

eL20