3D structure

PDB id
3JAG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
UAUUG*CAAGA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAG_282 not in the Motif Atlas
Geometric match to IL_4LFB_065
Geometric discrepancy: 0.3433
The information below is about IL_4LFB_065
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

3JAG|1|9|U|943
3JAG|1|9|A|944
3JAG|1|9|U|945
3JAG|1|9|U|946
3JAG|1|9|G|947
*
3JAG|1|9|C|979
3JAG|1|9|A|980
3JAG|1|9|A|981
3JAG|1|9|G|982
3JAG|1|9|A|983

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain A
uL2
Chain BB
eS1
Chain OO
uS11

Coloring options:


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