IL_3JAH_028

3D structure

PDB id

3JAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GCC*GCGAC

Length

8 nucleotides

Bulged bases

3JAH|1|5|G|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAH_028 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.3845

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

3JAH|1|5|G|488
3JAH|1|5|C|489
3JAH|1|5|C|490
*
3JAH|1|5|G|664
3JAH|1|5|C|665
3JAH|1|5|G|666
3JAH|1|5|A|667
3JAH|1|5|C|668

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain r

eL28