IL_3JAH_034

3D structure

PDB id

3JAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CUUUC*GGG

Length

8 nucleotides

Bulged bases

3JAH|1|5|U|513

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAH_034 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2362

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

3JAH|1|5|C|511
3JAH|1|5|U|512
3JAH|1|5|U|513
3JAH|1|5|U|514
3JAH|1|5|C|515
*
3JAH|1|5|G|646
3JAH|1|5|G|647
3JAH|1|5|G|648

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

eL13

Chain a

uL15