IL_3JAH_254

3D structure

PDB id

3JAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

ACU*AU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAH_254 not in the Motif Atlas

Geometric match to IL_8GLP_012

Geometric discrepancy: 0.3859

The information below is about IL_8GLP_012

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.11

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

3JAH|1|9|A|1537
3JAH|1|9|C|1538
3JAH|1|9|U|1539
*
3JAH|1|9|A|1594
3JAH|1|9|U|1595

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain FF

uS7

Chain QQ

uS9

Chain SS

uS13

Chain TT

eS19

Chain ZZ

eS25