IL_3JAH_290

3D structure

PDB id

3JAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CCC*GAGCG

Length

8 nucleotides

Bulged bases

3JAH|1|9|C|1783

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAH_290 not in the Motif Atlas

Geometric match to IL_4V9F_028

Geometric discrepancy: 0.3488

The information below is about IL_4V9F_028

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

3JAH|1|9|C|1750
3JAH|1|9|C|1751
3JAH|1|9|C|1752
*
3JAH|1|9|G|1780
3JAH|1|9|A|1781
3JAH|1|9|G|1782
3JAH|1|9|C|1783
3JAH|1|9|G|1784

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

eS6