3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GUGAAAC*GUGGAUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_019 not in the Motif Atlas
Homologous match to IL_5TBW_015
Geometric discrepancy: 0.0653
The information below is about IL_5TBW_015
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_66414.7
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

3JAI|1|5|G|415
3JAI|1|5|U|416
3JAI|1|5|G|417
3JAI|1|5|A|418
3JAI|1|5|A|419
3JAI|1|5|A|420
3JAI|1|5|C|421
*
3JAI|1|8|G|13
3JAI|1|8|U|14
3JAI|1|8|G|15
3JAI|1|8|G|16
3JAI|1|8|A|17
3JAI|1|8|U|18
3JAI|1|8|C|19

Current chains

Chain 5
28S ribosomal RNA
Chain 8
5.8S ribosomal RNA

Nearby chains

Chain C
uL4
Chain P
uL22
Chain e
eL32

Coloring options:


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