3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GGUC*GCUAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_020 not in the Motif Atlas
Geometric match to IL_7MLW_007
Geometric discrepancy: 0.3997
The information below is about IL_7MLW_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_99358.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
8

Unit IDs

3JAI|1|5|G|443
3JAI|1|5|G|444
3JAI|1|5|U|445
3JAI|1|5|C|446
*
3JAI|1|5|G|1300
3JAI|1|5|C|1301
3JAI|1|5|U|1302
3JAI|1|5|A|1303
3JAI|1|5|C|1304

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain e
eL32
Chain f
eL33

Coloring options:


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