IL_3JAI_030

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GCCCGGC*GUC

Length

10 nucleotides

Bulged bases

3JAI|1|5|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_030 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3334

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

3JAI|1|5|G|500
3JAI|1|5|C|501
3JAI|1|5|C|502
3JAI|1|5|C|503
3JAI|1|5|G|504
3JAI|1|5|G|505
3JAI|1|5|C|506
*
3JAI|1|5|G|652
3JAI|1|5|U|653
3JAI|1|5|C|654

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Q

eL18

Chain a

uL15