3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CGAG*CGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_052 not in the Motif Atlas
Geometric match to IL_4WF9_087
Geometric discrepancy: 0.1663
The information below is about IL_4WF9_087
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

3JAI|1|5|C|1431
3JAI|1|5|G|1432
3JAI|1|5|A|1433
3JAI|1|5|G|1434
*
3JAI|1|5|C|1450
3JAI|1|5|G|1451
3JAI|1|5|A|1452
3JAI|1|5|G|1453

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain Q
eL18

Coloring options:


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