IL_3JAI_052

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_052 not in the Motif Atlas

Geometric match to IL_4WF9_087

Geometric discrepancy: 0.1663

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

3JAI|1|5|C|1431
3JAI|1|5|G|1432
3JAI|1|5|A|1433
3JAI|1|5|G|1434
*
3JAI|1|5|C|1450
3JAI|1|5|G|1451
3JAI|1|5|A|1452
3JAI|1|5|G|1453

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Q

eL18