3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CGAAG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_058 not in the Motif Atlas
Geometric match to IL_4V9F_027
Geometric discrepancy: 0.0852
The information below is about IL_4V9F_027
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_50730.2
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
19

Unit IDs

3JAI|1|5|C|1551
3JAI|1|5|G|1552
3JAI|1|5|A|1553
3JAI|1|5|A|1554
3JAI|1|5|G|1555
*
3JAI|1|5|U|1572
3JAI|1|5|G|1573
3JAI|1|5|G|1574
3JAI|1|5|A|1575
3JAI|1|5|G|1576

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain A
uL2
Chain R
eL19
Chain p
eL43

Coloring options:


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