IL_3JAI_076

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

3JAI|1|5|G|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_076 not in the Motif Atlas

Geometric match to IL_7D7V_002

Geometric discrepancy: 0.3887

The information below is about IL_7D7V_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

3JAI|1|5|U|1918
3JAI|1|5|G|1919
3JAI|1|5|C|1920
*
3JAI|1|5|G|2063
3JAI|1|5|G|2064

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain F

uL30

Chain M

eL14

Chain O

uL13

Chain S

eL20

Chain f

eL33