IL_3JAI_082

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

3JAI|1|5|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_082 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.4608

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

3JAI|1|5|G|1973
3JAI|1|5|U|1974
3JAI|1|5|G|1975
3JAI|1|5|G|1976
3JAI|1|5|C|1977
*
3JAI|1|5|G|1989
3JAI|1|5|A|1990
3JAI|1|5|A|1991
3JAI|1|5|U|1992
3JAI|1|5|C|1993

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

uL16

Chain s

uL10

Chain t

uL11