3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CCG*CG
Length
5 nucleotides
Bulged bases
3JAI|1|5|C|2084
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_084 not in the Motif Atlas
Geometric match to IL_3DIL_001
Geometric discrepancy: 0.3666
The information below is about IL_3DIL_001
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.15
Basepair signature
cWW-L-cWW
Number of instances in this motif group
41

Unit IDs

3JAI|1|5|C|2083
3JAI|1|5|C|2084
3JAI|1|5|G|2085
*
3JAI|1|5|C|2272
3JAI|1|5|G|2273

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain C
uL4
Chain F
uL30
Chain Q
eL18
Chain e
eL32

Coloring options:


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