3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GC*GCAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_118 not in the Motif Atlas
Homologous match to IL_8C3A_094
Geometric discrepancy: 0.0981
The information below is about IL_8C3A_094
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22551.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
9

Unit IDs

3JAI|1|5|G|3780
3JAI|1|5|C|3781
*
3JAI|1|5|G|3811
3JAI|1|5|C|3812
3JAI|1|5|A|3813
3JAI|1|5|U|3814

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 2
Transfer RNA; tRNA
Chain 9
Small subunit ribosomal RNA; SSU rRNA
Chain ii
eRF1
Chain n
eL41

Coloring options:


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