IL_3JAI_121

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

3JAI|1|5|A|3901, 3JAI|1|5|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_121 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.1049

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3JAI|1|5|G|3900
3JAI|1|5|A|3901
3JAI|1|5|A|3902
*
3JAI|1|5|U|4558
3JAI|1|5|A|4559
3JAI|1|5|C|4560
3JAI|1|5|C|4561

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 1

peptide

Chain B

uL3

Chain P

uL22