3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GGG*CAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_163 not in the Motif Atlas
Geometric match to IL_3HHN_004
Geometric discrepancy: 0.1361
The information below is about IL_3HHN_004
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

3JAI|1|5|G|4992
3JAI|1|5|G|4993
3JAI|1|5|G|4994
*
3JAI|1|5|C|5057
3JAI|1|5|A|5058
3JAI|1|5|C|5059

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
uL3
Chain d
eL31

Coloring options:


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