IL_3JAI_179

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

3JAI|1|9|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_179 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3245

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

3JAI|1|9|C|37
3JAI|1|9|A|38
3JAI|1|9|A|39
3JAI|1|9|A|40
*
3JAI|1|9|U|514
3JAI|1|9|G|515
3JAI|1|9|A|516
3JAI|1|9|C|517
3JAI|1|9|G|518

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24