IL_3JAI_201

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

AAU*AAUU

Length

7 nucleotides

Bulged bases

3JAI|1|9|U|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_201 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.1701

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

3JAI|1|9|A|528
3JAI|1|9|A|529
3JAI|1|9|U|530
*
3JAI|1|9|A|554
3JAI|1|9|A|555
3JAI|1|9|U|556
3JAI|1|9|U|557

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

uS4

Chain ee

eS30