IL_3JAI_218

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

3JAI|1|9|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_218 not in the Motif Atlas

Geometric match to IL_3SJ2_002

Geometric discrepancy: 0.2627

The information below is about IL_3SJ2_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

3JAI|1|9|G|925
3JAI|1|9|A|926
3JAI|1|9|C|927
*
3JAI|1|9|G|1014
3JAI|1|9|U|1015
3JAI|1|9|U|1016
3JAI|1|9|U|1017

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain NN

uS15

Chain bb

eS27