3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GCC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_235 not in the Motif Atlas
Homologous match to IL_4V88_446
Geometric discrepancy: 0.1745
The information below is about IL_4V88_446
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

3JAI|1|9|G|1270
3JAI|1|9|C|1271
3JAI|1|9|C|1272
*
3JAI|1|9|G|1510
3JAI|1|9|U|1511
3JAI|1|9|C|1512

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain KK
eS10
Chain PP
uS19
Chain dd
uS14
Chain ff
eS31

Coloring options:


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