3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GACAGGAUUGA*UUCUCGAUUC
Length
21 nucleotides
Bulged bases
3JAI|1|9|C|1283, 3JAI|1|9|G|1285
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAI|1|9|G|1281
3JAI|1|9|A|1282
3JAI|1|9|C|1283
3JAI|1|9|A|1284
3JAI|1|9|G|1285
3JAI|1|9|G|1286
3JAI|1|9|A|1287
3JAI|1|9|U|1288
3JAI|1|9|U|1289
3JAI|1|9|G|1290
3JAI|1|9|A|1291
*
3JAI|1|9|U|1307
3JAI|1|9|U|1308
3JAI|1|9|C|1309
3JAI|1|9|U|1310
3JAI|1|9|C|1311
3JAI|1|9|G|1312
3JAI|1|9|A|1313
3JAI|1|9|U|1314
3JAI|1|9|U|1315
3JAI|1|9|C|1316

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain KK
eS10
Chain MM
eS12
Chain dd
uS14
Chain ff
eS31

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1641 s