IL_3JAI_254

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAI_254 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.0885

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

3JAI|1|9|G|1604
3JAI|1|9|G|1605
3JAI|1|9|G|1606
3JAI|1|9|A|1607
3JAI|1|9|U|1608
3JAI|1|9|C|1609
3JAI|1|9|G|1610
*
3JAI|1|9|C|1629
3JAI|1|9|A|1630
3JAI|1|9|U|1631
3JAI|1|9|G|1632
3JAI|1|9|A|1633
3JAI|1|9|A|1634
3JAI|1|9|C|1635

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain SS

uS13

Chain TT

eS19