3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GGGAUCG*CAUGAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAI_254 not in the Motif Atlas
Homologous match to IL_8C3A_469
Geometric discrepancy: 0.0885
The information below is about IL_8C3A_469
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_10092.1
Basepair signature
cWW-tSH-tSH-L-R-cWW-L-R-cWW
Number of instances in this motif group
1

Unit IDs

3JAI|1|9|G|1604
3JAI|1|9|G|1605
3JAI|1|9|G|1606
3JAI|1|9|A|1607
3JAI|1|9|U|1608
3JAI|1|9|C|1609
3JAI|1|9|G|1610
*
3JAI|1|9|C|1629
3JAI|1|9|A|1630
3JAI|1|9|U|1631
3JAI|1|9|G|1632
3JAI|1|9|A|1633
3JAI|1|9|A|1634
3JAI|1|9|C|1635

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain SS
uS13
Chain TT
eS19

Coloring options:


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