IL_3JAJ_006

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

3JAJ|1|4|A|176

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAJ_006 not in the Motif Atlas

Geometric match to IL_1MFQ_005

Geometric discrepancy: 0.3196

The information below is about IL_1MFQ_005

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

3JAJ|1|4|G|175
3JAJ|1|4|A|176
3JAJ|1|4|G|177
*
3JAJ|1|4|C|220
3JAJ|1|4|C|221

Current chains

Chain 4

SRP 7S RNA

Nearby chains

Chain 6

SRP68