IL_3JAJ_025
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 3JAJ|1|5|G|409, 3JAJ|1|5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAJ_025 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.2026
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
3JAJ|1|5|G|387
3JAJ|1|5|A|388
3JAJ|1|5|A|389
3JAJ|1|5|C|390
*
3JAJ|1|5|G|401
3JAJ|1|5|A|402
3JAJ|1|5|G|403
3JAJ|1|5|U|404
3JAJ|1|5|U|405
3JAJ|1|5|C|406
3JAJ|1|5|A|407
3JAJ|1|5|A|408
3JAJ|1|5|G|409
3JAJ|1|5|A|410
3JAJ|1|5|G|411
3JAJ|1|5|G|412
3JAJ|1|5|G|413
3JAJ|1|5|C|414
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- Ribosomal protein uL22
- Chain Y
- Ribosomal protein uL24
- Chain l
- Ribosomal protein eL39
- Chain z
- SRP54
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