IL_3JAJ_028

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

3JAJ|1|5|C|696

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAJ_028 not in the Motif Atlas

Geometric match to IL_1KUQ_002

Geometric discrepancy: 0.3825

The information below is about IL_1KUQ_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

3JAJ|1|5|C|459
3JAJ|1|5|C|460
*
3JAJ|1|5|G|695
3JAJ|1|5|C|696
3JAJ|1|5|G|697

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eL6

Chain r

Ribosomal protein eL28