IL_3JAJ_033

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

3JAJ|1|5|C|501, 3JAJ|1|5|C|502, 3JAJ|1|5|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAJ_033 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.2569

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

3JAJ|1|5|G|500
3JAJ|1|5|C|501
3JAJ|1|5|C|502
3JAJ|1|5|C|503
3JAJ|1|5|G|504
3JAJ|1|5|G|505
*
3JAJ|1|5|U|653
3JAJ|1|5|C|654

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uL4

Chain Q

Ribosomal protein eL18