IL_3JAJ_035

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUUUC*GGG

Length

8 nucleotides

Bulged bases

3JAJ|1|5|U|513, 3JAJ|1|5|U|514

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAJ_035 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2842

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

3JAJ|1|5|C|511
3JAJ|1|5|U|512
3JAJ|1|5|U|513
3JAJ|1|5|U|514
3JAJ|1|5|C|515
*
3JAJ|1|5|G|646
3JAJ|1|5|G|647
3JAJ|1|5|G|648

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein eL13

Chain a

Ribosomal protein uL15