IL_3JAJ_039

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAAGG*CAGCAGCACUC

Length

16 nucleotides

Bulged bases

3JAJ|1|5|G|933, 3JAJ|1|5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|5|G|731
3JAJ|1|5|A|732
3JAJ|1|5|A|733
3JAJ|1|5|G|734
3JAJ|1|5|G|735
*
3JAJ|1|5|C|928
3JAJ|1|5|A|929
3JAJ|1|5|G|930
3JAJ|1|5|C|931
3JAJ|1|5|A|932
3JAJ|1|5|G|933
3JAJ|1|5|C|934
3JAJ|1|5|A|935
3JAJ|1|5|C|936
3JAJ|1|5|U|937
3JAJ|1|5|C|938

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uL4

Chain M

Ribosomal protein eL14

Chain S

Ribosomal protein eL20