3D structure

PDB id
3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the engaged state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
AGA*UAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAJ_068 not in the Motif Atlas
Geometric match to IL_5TBW_042
Geometric discrepancy: 0.1692
The information below is about IL_5TBW_042
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

3JAJ|1|5|A|1749
3JAJ|1|5|G|1750
3JAJ|1|5|A|1751
*
3JAJ|1|5|U|1779
3JAJ|1|5|A|1780
3JAJ|1|5|U|1781

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain D
Ribosomal protein uL18
Chain I
Ribosomal protein uL16

Coloring options:


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