IL_3JAJ_153

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

3JAJ|1|5|C|5013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAJ_153 not in the Motif Atlas

Geometric match to IL_4WF9_035

Geometric discrepancy: 0.3597

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

3JAJ|1|5|G|5012
3JAJ|1|5|C|5013
3JAJ|1|5|A|5014
*
3JAJ|1|5|U|5035
3JAJ|1|5|C|5036

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain W

Ribosomal protein eL24