IL_3JAJ_164
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CAAA*UGACG
- Length
- 9 nucleotides
- Bulged bases
- 3JAJ|1|S2|A|516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAJ_164 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.3758
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
3JAJ|1|S2|C|37
3JAJ|1|S2|A|38
3JAJ|1|S2|A|39
3JAJ|1|S2|A|40
*
3JAJ|1|S2|U|514
3JAJ|1|S2|G|515
3JAJ|1|S2|A|516
3JAJ|1|S2|C|517
3JAJ|1|S2|G|518
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain S4
- SRP14
- Chain SE
- Ribosomal protein eS4
- Chain SJ
- Ribosomal protein uS4
- Chain SY
- Ribosomal protein eS24
Coloring options: