IL_3JAJ_179

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

3JAJ|1|S2|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAJ_179 not in the Motif Atlas

Homologous match to IL_8C3A_412

Geometric discrepancy: 0.437

The information below is about IL_8C3A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49054.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

3JAJ|1|S2|G|411
3JAJ|1|S2|G|412
3JAJ|1|S2|G|413
*
3JAJ|1|S2|C|424
3JAJ|1|S2|G|425
3JAJ|1|S2|A|426
3JAJ|1|S2|U|427
3JAJ|1|S2|U|428
3JAJ|1|S2|C|429

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SJ

Ribosomal protein uS4

Chain SX

Ribosomal protein uS12