IL_3JAJ_186

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UACAGGAC*GGCCCUGUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|S2|U|530
3JAJ|1|S2|A|531
3JAJ|1|S2|C|532
3JAJ|1|S2|A|533
3JAJ|1|S2|G|534
3JAJ|1|S2|G|535
3JAJ|1|S2|A|536
3JAJ|1|S2|C|537
*
3JAJ|1|S2|G|546
3JAJ|1|S2|G|547
3JAJ|1|S2|C|548
3JAJ|1|S2|C|549
3JAJ|1|S2|C|550
3JAJ|1|S2|U|551
3JAJ|1|S2|G|552
3JAJ|1|S2|U|553
3JAJ|1|S2|A|554

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

Ribosomal protein uS4

Chain Se

Ribosomal protein eS30